Package: CINNA 1.2.2

CINNA: Deciphering Central Informative Nodes in Network Analysis

Computing, comparing, and demonstrating top informative centrality measures within a network. "CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis" provides a comprehensive overview of the package functionality Ashtiani et al. (2018) <doi:10.1093/bioinformatics/bty819>.

Authors:Minoo Ashtiani [aut, cre], Mehdi Mirzaie [ctb], Mohieddin Jafari [ctb]

CINNA_1.2.2.tar.gz
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CINNA_1.2.2.tgz(r-4.4-any)CINNA_1.2.2.tgz(r-4.3-any)
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CINNA.pdf |CINNA.html✨
CINNA/json (API)

# Install 'CINNA' in R:
install.packages('CINNA', repos = c('https://minoo-asty.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.27 score 1 stars 94 scripts 504 downloads 2 mentions 22 exports 131 dependencies

Last updated 1 years agofrom:2323440667. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 19 2024
R-4.5-winNOTENov 19 2024
R-4.5-linuxNOTENov 19 2024
R-4.4-winNOTENov 19 2024
R-4.4-macNOTENov 19 2024
R-4.3-winNOTENov 19 2024
R-4.3-macNOTENov 19 2024

Exports:calculate_centralitiesdangalchev_closeness_centralitygiant_component_extractgraph_extract_componentsgroup_centralityharmonic_centralitylocal_bridging_centralitymisc_extract_componentspca_centralitiesproper_centralitiessummary_calculate_centralitiessummary_graph_extract_componentssummary_pca_centralitiessummary_tsne_centralitiestsne_centralitiesvisualize_associationvisualize_correlationsvisualize_dendrogramvisualize_graphvisualize_heatmapvisualize_pair_correlationwiener_index_centrality

Dependencies:abindbackportsbase64encbootbroombslibcachemcarcarDatacentiservecirclizecliclustercodacolorspacecorrplotcowplotcpp11crayoncrosstalkdendextendDerivdigestdoBydplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfansifarverfastmapflashClustfontawesomeforcatsFormulafsgenericsGGallyggplot2ggpubrggrepelggsciggsignifggstatsGlobalOptionsgluegridExtragtablehighrhmshtmltoolshtmlwidgetshttpuvigraphintergraphisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompViewmunsellmvtnormnetworknlmenloptrnnetnumDerivpatchworkpbkrtestpheatmappillarpkgconfigplyrpolynomprettyunitsprogresspromisespurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreshape2rlangrmarkdownrstatixRtsnesassscalesscatterplot3dshapesnaSparseMstatnet.commonstringistringrsurvivaltibbletidyrtidyselecttinytexutf8vctrsviridisviridisLitewithrxfunyaml

CINNA

Minoo Ashtiani, Mehdi Mirzaie, Mohieddin Jafari

Rendered fromCINNA.Rmdusingknitr::rmarkdownon Nov 19 2024.

Last update: 2022-04-07
Started: 2017-07-15

Readme and manuals

Help Manual

Help pageTopics
Centrality measure calculationcalculate_centralities
Macaque Visual Cortex Networkcortex
Dangalchev Closeness Centralitydangalchev_closeness_centrality
Drug Target NetworkdrugTarget
Giant component extraction of a graphgiant_component_extract
Group Centralitygroup_centrality
Harmonic Centralityharmonic_centrality
Kangaroo Networkkangaroo
Local Bridging Centralitylocal_bridging_centrality
Component extraction of miscellaneous graph formatsmisc_extract_components
PCA Centrality Measurespca_centralities
Proper centrality measure representationproper_centralities
Moreno Rhesus Networkrhesus
Summarize centrality measure calculation resultssummary_calculate_centralities
Summarize component extraction of a graphsummary_graph_extract_components
Summarize PCA result related to centrality measuressummary_pca_centralities
Summarize t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measuressummary_tsne_centralities
t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measurestsne_centralities
Pairwise association plot between centrality measuresvisualize_association
Correlation plot between centrality measuresvisualize_correlations
Dendrogram plot among centrality measuresvisualize_dendrogram
Graph visualization based on a specific centrality measurevisualize_graph
Heatmap plot between centrality measuresvisualize_heatmap
Pairwise correlation plot between two centrality measuresvisualize_pair_correlation
Wiener Index Centralitywiener_index_centrality
Zachary Karate Club Networkzachary