1 Introduction | 2 Some real network examples | 2.1 Undirected & unweighted network | 2.2 Undirected & weighted network | 2.3 Directed & unweighted network | 2.4 Directed & weighted network | 2.5 Bipartite & directed network | 3 Network component analysis | 3.1 The segregation of "igraph" and "network" objects | 3.2 The segregation of other graph formats | 3.3 Giant component extraction | 4 Centrality measure analysis | 4.1 Suggestion of proper centralities | 4.2 Centrality computations | 4.3 Recognition of most informative measures | 5 visualization of centrality analysis | 5.1 Graph visualization regarding to the centrality type | 5.2 Heatmap of centrality measure values | 5.3 Correlation between computed centrality measures | 5.4 Node dendrogram based on a centrality type | 5.5 Regression across centrality measures | 5.6 Pairwise correlation between centrality types | References
Package: CINNA 1.2.2
CINNA: Deciphering Central Informative Nodes in Network Analysis
Computing, comparing, and demonstrating top informative centrality measures within a network. "CINNA: an R/CRAN package to decipher Central Informative Nodes in Network Analysis" provides a comprehensive overview of the package functionality Ashtiani et al. (2018) <doi:10.1093/bioinformatics/bty819>.
Authors:
CINNA_1.2.2.tar.gz
CINNA_1.2.2.zip(r-4.7-any)CINNA_1.2.2.zip(r-4.6-any)CINNA_1.2.2.zip(r-4.5-any)
CINNA_1.2.2.tgz(r-4.6-any)CINNA_1.2.2.tgz(r-4.5-any)
CINNA_1.2.2.tar.gz(r-4.7-any)CINNA_1.2.2.tar.gz(r-4.6-any)
CINNA_1.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CINNA/json (API)
| # Install 'CINNA' in R: |
| install.packages('CINNA', repos = c('https://minoo-asty.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- cortex - Macaque Visual Cortex Network
- drugTarget - Drug Target Network
- kangaroo - Kangaroo Network
- rhesus - Moreno Rhesus Network
- zachary - Zachary Karate Club Network
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:2323440667. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 213 | ||
| source / vignettes | OK | 264 | ||
| linux-release | NOTE | 225 | ||
| macos-release | NOTE | 283 | ||
| macos-oldrel | NOTE | 389 | ||
| windows-devel | NOTE | 131 | ||
| windows-release | NOTE | 119 | ||
| windows-oldrel | NOTE | 91 | ||
| wasm-release | OK | 127 |
Exports:calculate_centralitiesdangalchev_closeness_centralitygiant_component_extractgraph_extract_componentsgroup_centralityharmonic_centralitylocal_bridging_centralitymisc_extract_componentspca_centralitiesproper_centralitiessummary_calculate_centralitiessummary_graph_extract_componentssummary_pca_centralitiessummary_tsne_centralitiestsne_centralitiesvisualize_associationvisualize_correlationsvisualize_dendrogramvisualize_graphvisualize_heatmapvisualize_pair_correlationwiener_index_centrality
Dependencies:abindbackportsbase64encbootbroombslibcachemcarcarDatacentiservecirclizecliclustercodacolorspacecorrplotcowplotcpp11crayoncrosstalkdendextendDerivdigestdoBydplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfarverfastmapflashClustfontawesomeforcatsforecastFormulafracdifffsgenericsGGallyggplot2ggpubrggrepelggsciggsignifggstatsGlobalOptionsgluegridExtragtablehighrhmshtmltoolshtmlwidgetsigraphintergraphirlbaisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmemoisemgcvmimeminqamodelrmultcompViewmvtnormnetworknlmenloptrnnetnumDerivotelpatchworkpbkrtestpheatmappillarpkgconfigplyrpolynomprettyunitsprogresspromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrmarkdownrstatixRtsneS7sassscalesscatterplot3dshapeshowtextshowtextdbsnaSparseMstatnet.commonstringistringrsurvivalsysfontstibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisviridisLitewithrxfunyamlzoo
